Variant report

Variant	rs5994607
Chromosome Location	chr22:33101173-33101174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000100225	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000100170	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56990986	1.00[AMR][1000 genomes]
rs5994606	1.00[ASN][1000 genomes]
rs5998583	1.00[ASN][1000 genomes]
rs5998584	1.00[ASN][1000 genomes]
rs5998585	1.00[ASN][1000 genomes]
rs5998586	1.00[ASN][1000 genomes]
rs5998588	1.00[ASN][1000 genomes]
rs73881783	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33095400-33102600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:33097200-33102200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr22:33097400-33102400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr22:33100000-33103800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links