Variant report

Variant	rs59947970
Chromosome Location	chr9:14926127-14926128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10961790	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12002382	0.93[ASN][1000 genomes]
rs60446733	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60982740	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61521834	1.00[AFR][1000 genomes]
rs73417693	0.86[AFR][1000 genomes]
rs73419715	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73642461	0.97[ASN][1000 genomes]
rs73642463	0.93[ASN][1000 genomes]
rs73642464	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7870510	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892620	chr9:14922877-15086021	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14920600-14935200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:14925000-14927600	Enhancers	Primary hematopoietic stem cells	blood
3	chr9:14925200-14926400	Enhancers	Adipose Nuclei	Adipose
4	chr9:14925200-14926600	Weak transcription	Fetal Stomach	stomach
5	chr9:14925200-14926800	Weak transcription	Fetal Kidney	kidney
6	chr9:14925200-14927000	Enhancers	Fetal Lung	lung
7	chr9:14925200-14945400	Weak transcription	Aorta	Aorta
8	chr9:14925600-14927000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:14925600-14927400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:14925600-14928600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:14926000-14927000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:14926000-14928800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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