Variant report

Variant	rs59951080
Chromosome Location	chr4:85021088-85021089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73833622	1.00[AFR][1000 genomes]
rs73833623	1.00[AFR][1000 genomes]
rs73833627	0.96[AFR][1000 genomes]
rs73833657	0.81[AFR][1000 genomes]
rs73833659	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85020400-85021800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:85020600-85021200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:85020600-85021200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:85020600-85021600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:85020600-85021800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr4:85020800-85021200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:85020800-85021200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:85020800-85021600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:85020800-85021600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:85020800-85021800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:85020800-85021800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:85021000-85021400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:85021000-85021400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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