Variant report

Variant	rs59955684
Chromosome Location	chr7:149367255-149367256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10487554	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11762038	0.91[ASN][1000 genomes]
rs11763060	0.95[ASN][1000 genomes]
rs1371121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1583709	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1821950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2373488	0.91[ASN][1000 genomes]
rs2888582	0.91[ASN][1000 genomes]
rs2888583	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59676581	0.91[ASN][1000 genomes]
rs61096451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6951171	0.91[ASN][1000 genomes]
rs6966813	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021849	chr7:149230929-149422239	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1034350	chr7:149264094-149666356	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv539190	chr7:149264094-149666356	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1023901	chr7:149364044-149747442	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv539191	chr7:149364044-149747442	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149360200-149370400	Weak transcription	Placenta	Placenta
2	chr7:149366600-149367400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:149366600-149368000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:149367000-149367400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:149367000-149367400	Enhancers	Colon Smooth Muscle	Colon
6	chr7:149367000-149367400	Enhancers	Fetal Lung	lung
7	chr7:149367000-149368000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:149367000-149368200	Enhancers	Fetal Muscle Leg	muscle
9	chr7:149367000-149368400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr7:149367200-149367400	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:149367200-149367600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr7:149367200-149367600	Active TSS	Stomach Smooth Muscle	stomach
13	chr7:149367200-149367800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:149367200-149367800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr7:149367200-149368000	Enhancers	Rectal Smooth Muscle	rectum
16	chr7:149367200-149368200	Enhancers	Brain Hippocampus Middle	brain
17	chr7:149367200-149368200	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr7:149367200-149368200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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