Variant report

Variant	rs59963881
Chromosome Location	chr3:179590686-179590687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73055495	0.81[EUR][1000 genomes]
rs73060768	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179533800-179605000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:179537800-179599400	Weak transcription	Brain Anterior Caudate	brain
3	chr3:179564200-179606000	Strong transcription	Dnd41	blood
4	chr3:179571400-179596800	Weak transcription	Brain Angular Gyrus	brain
5	chr3:179575200-179591200	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:179580200-179598600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:179586800-179591200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:179589400-179590800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:179589600-179591200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:179590000-179590800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:179590400-179591600	Strong transcription	Brain Substantia Nigra	brain
12	chr3:179590600-179590800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:179590600-179598800	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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