Variant report

Variant	rs59969050
Chromosome Location	chr6:163783564-163783565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1414723	1.00[AMR][1000 genomes]
rs16894839	1.00[EUR][1000 genomes]
rs57610010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73605704	1.00[EUR][1000 genomes]
rs73605708	1.00[EUR][1000 genomes]
rs73605726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458812	1.00[EUR][1000 genomes]
rs9458815	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163777400-163786800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:163777400-163787400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:163777400-163790000	Weak transcription	Spleen	Spleen
4	chr6:163777400-163791400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:163778000-163788600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:163778400-163790800	Weak transcription	Right Atrium	heart
7	chr6:163782000-163784200	Enhancers	Brain Angular Gyrus	brain
8	chr6:163782200-163784400	Enhancers	Brain Cingulate Gyrus	brain
9	chr6:163782200-163788000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:163783200-163783600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:163783200-163783800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:163783200-163784000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:163783400-163783600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:163783400-163783800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:163783400-163783800	Flanking Active TSS	Brain Anterior Caudate	brain
16	chr6:163783400-163783800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:163783400-163784000	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr6:163783400-163784000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:163783400-163784000	Flanking Active TSS	Brain Substantia Nigra	brain
20	chr6:163783400-163784000	Bivalent Enhancer	HepG2	liver

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