Variant report

Variant	rs5997325
Chromosome Location	chr22:28348833-28348834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28343542..28345566-chr22:28347293..28349290,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs5752673	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5762426	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs738475	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28316400-28358600	Weak transcription	Placenta	Placenta
2	chr22:28316400-28370200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr22:28316400-28376800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr22:28316400-28378000	Weak transcription	Esophagus	oesophagus
5	chr22:28318800-28382000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr22:28319600-28358000	Weak transcription	Brain Germinal Matrix	brain
7	chr22:28319600-28383000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr22:28321000-28354800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr22:28321200-28358400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr22:28321400-28379000	Weak transcription	Primary B cells from cord blood	blood
11	chr22:28322000-28365200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr22:28322000-28366200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr22:28326800-28368600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr22:28329400-28377800	Weak transcription	Primary T cells from cord blood	blood
15	chr22:28339400-28352400	Weak transcription	Fetal Stomach	stomach
16	chr22:28339400-28367800	Weak transcription	Fetal Intestine Small	intestine
17	chr22:28346000-28356600	Weak transcription	HepG2	liver
18	chr22:28347600-28349200	Enhancers	NHDF-Ad	bronchial
19	chr22:28347600-28355200	Weak transcription	Left Ventricle	heart
20	chr22:28347800-28349200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr22:28347800-28349200	Enhancers	Hela-S3	cervix
22	chr22:28347800-28349400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr22:28347800-28349400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr22:28347800-28349600	Enhancers	Liver	Liver
25	chr22:28348000-28349000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr22:28348000-28349000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr22:28348000-28349000	Enhancers	Brain Anterior Caudate	brain
28	chr22:28348000-28349000	Enhancers	HSMM	muscle
29	chr22:28348000-28349200	Enhancers	Psoas Muscle	Psoas
30	chr22:28348000-28349200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr22:28348000-28349200	Enhancers	NHLF	lung
32	chr22:28348000-28349600	Enhancers	Fetal Lung	lung
33	chr22:28348200-28349000	Enhancers	Adipose Nuclei	Adipose
34	chr22:28348200-28349200	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr22:28348400-28355400	Weak transcription	Ovary	ovary
36	chr22:28348400-28357800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr22:28348600-28349000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr22:28348800-28352400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr22:28348800-28358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr22:28348800-28358400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links