Variant report

Variant	rs59976990
Chromosome Location	chr11:16942287-16942288
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16940350..16941917-chr11:16941999..16944749,2	MCF-7	breast:
2	chr11:16924785..16927963-chr11:16940444..16943241,3	MCF-7	breast:
3	chr11:16938600..16942869-chr11:16945668..16948073,6	MCF-7	breast:
4	chr11:16940779..16943639-chr11:16945273..16947792,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73425281	0.87[AFR][1000 genomes]
rs73427276	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16927800-16944400	Weak transcription	A549	lung
2	chr11:16931400-16944200	Weak transcription	Esophagus	oesophagus
3	chr11:16936800-16944400	Weak transcription	Right Atrium	heart
4	chr11:16936800-16944400	Weak transcription	Right Ventricle	heart
5	chr11:16938400-16943400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:16939200-16945000	Enhancers	Stomach Mucosa	stomach
7	chr11:16939200-16945400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:16939400-16944800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr11:16940000-16944400	Weak transcription	Gastric	stomach
10	chr11:16940600-16942400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:16940800-16944400	Weak transcription	Pancreas	Pancrea
12	chr11:16940800-16945400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:16941000-16944400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:16941000-16945000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:16941000-16945400	Weak transcription	NHEK	skin
16	chr11:16941200-16944000	Weak transcription	Placenta	Placenta
17	chr11:16941400-16942400	Enhancers	Liver	Liver
18	chr11:16941400-16944200	Enhancers	Fetal Intestine Small	intestine
19	chr11:16941400-16945200	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr11:16941400-16945400	Enhancers	Fetal Intestine Large	intestine
21	chr11:16941600-16943200	Enhancers	Colonic Mucosa	Colon
22	chr11:16941600-16945000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:16941800-16942400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr11:16941800-16943600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr11:16941800-16944200	Weak transcription	HMEC	breast
26	chr11:16942000-16943400	Weak transcription	Small Intestine	intestine
27	chr11:16942200-16942400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:16942200-16942400	Flanking Active TSS	Fetal Heart	heart
29	chr11:16942200-16942400	Enhancers	Ovary	ovary
30	chr11:16942200-16943000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:16942200-16943000	Enhancers	Left Ventricle	heart

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