Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs136316	0.99[ASN][1000 genomes]
rs136317	0.98[ASN][1000 genomes]
rs136337	0.81[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[ASN][1000 genomes]
rs136339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs136340	0.88[ASN][1000 genomes]
rs136343	0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[ASN][1000 genomes]
rs136344	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs136345	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs136346	0.88[ASN][1000 genomes]
rs136351	0.91[ASN][1000 genomes]
rs136354	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs136355	0.88[ASN][1000 genomes]
rs136356	0.85[ASN][1000 genomes]
rs136383	0.87[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs4820897	0.82[ASN][1000 genomes]
rs4820899	0.90[ASN][1000 genomes]
rs5749161	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5753281	0.87[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs5753298	0.86[CHD][hapmap];0.86[JPT][hapmap]
rs5753299	0.85[ASN][1000 genomes]
rs5753300	0.88[ASN][1000 genomes]
rs926340	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv2763260	chr22:31141521-31185000	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs5997762	TTC28AS	cis	parietal	SCAN
rs5997762	FBXO7	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31140000-31185400	Weak transcription	Fetal Brain Female	brain
2	chr22:31150000-31173400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr22:31151400-31172800	Weak transcription	Brain Anterior Caudate	brain
4	chr22:31160200-31172600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr22:31160200-31177400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr22:31167600-31176000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr22:31168000-31173400	Weak transcription	Brain Substantia Nigra	brain
8	chr22:31168000-31173600	Weak transcription	Brain Angular Gyrus	brain
9	chr22:31168000-31185400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr22:31168600-31175600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr22:31168600-31175800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr22:31168600-31175800	Weak transcription	Right Atrium	heart
13	chr22:31171000-31171800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr22:31171200-31171400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search: