Variant report

Variant	rs5997778
Chromosome Location	chr22:31232216-31232217
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv588888	chr22:31212641-31249333	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv522377	chr22:31232074-31249333	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv914973	chr22:31232074-31264281	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31226800-31233200	Weak transcription	Fetal Brain Male	brain
2	chr22:31227200-31232600	Weak transcription	Brain Angular Gyrus	brain
3	chr22:31227400-31232400	Weak transcription	Brain Anterior Caudate	brain
4	chr22:31227400-31233400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr22:31227600-31232400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr22:31227800-31233400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr22:31228000-31233600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr22:31228200-31233600	Weak transcription	HMEC	breast
9	chr22:31228200-31233600	Weak transcription	NHDF-Ad	bronchial
10	chr22:31229400-31238800	Weak transcription	HSMM	muscle
11	chr22:31229800-31233000	Genic enhancers	Hela-S3	cervix
12	chr22:31231400-31232400	Enhancers	NHEK	skin
13	chr22:31231800-31234400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr22:31232200-31232600	Enhancers	A549	lung
15	chr22:31232200-31233000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr22:31232200-31233600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr22:31232200-31233800	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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