Variant report
| Variant | rs59977939 |
|---|---|
| Chromosome Location | chr12:56259310-56259311 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000170473 | Chromatin interaction |
| ENSG00000065357 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:4)
| rs_ID | r2[population] |
|---|---|
| rs55954216 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61658243 | 1.00[AMR][1000 genomes] |
| rs7302270 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs772469 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv719 | chr12:56246405-56290812 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv508675 | chr12:56249598-56260508 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
