Variant report

Variant	rs5997860
Chromosome Location	chr22:31454913-31454914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31363469..31366268-chr22:31450278..31456884,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133422	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12159096	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16989341	1.00[AMR][1000 genomes]
rs5753437	0.84[AFR][1000 genomes]
rs5997858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5997859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv524366	chr22:31440703-31480069	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829173	chr22:31450043-31543956	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv964620	chr22:31452981-31465140	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31441600-31455000	Enhancers	Fetal Stomach	stomach
2	chr22:31443600-31455400	Weak transcription	K562	blood
3	chr22:31451400-31455400	Weak transcription	Right Ventricle	heart
4	chr22:31452000-31458000	Weak transcription	Adipose Nuclei	Adipose
5	chr22:31452200-31455600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr22:31452200-31455600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr22:31452200-31455600	Weak transcription	Ovary	ovary
8	chr22:31452200-31455800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr22:31452200-31455800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr22:31452200-31456000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr22:31452200-31456000	Weak transcription	NHEK	skin
12	chr22:31452800-31455600	Weak transcription	HMEC	breast
13	chr22:31452800-31456800	Weak transcription	Hela-S3	cervix
14	chr22:31452800-31458200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr22:31453000-31455600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr22:31453000-31455600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr22:31453000-31455600	Weak transcription	Placenta	Placenta
18	chr22:31453200-31455400	Weak transcription	Fetal Lung	lung
19	chr22:31453200-31455600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr22:31453200-31455600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr22:31453200-31455600	Weak transcription	Fetal Intestine Large	intestine
22	chr22:31453200-31455600	Weak transcription	Fetal Intestine Small	intestine
23	chr22:31453400-31455600	Weak transcription	Fetal Muscle Leg	muscle
24	chr22:31453400-31455600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr22:31453400-31455600	Weak transcription	HepG2	liver
26	chr22:31453400-31455800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr22:31453600-31455200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr22:31453600-31455600	Weak transcription	A549	lung
29	chr22:31454400-31455600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr22:31454400-31455800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr22:31454600-31455600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr22:31454600-31455600	Weak transcription	Placenta Amnion	Placenta Amnion

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