Variant report

Variant	rs59984884
Chromosome Location	chr4:103092557-103092558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11726967	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11727065	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11727724	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11727828	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11734042	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11736322	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11737207	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11737366	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11934799	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1595845	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17032150	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2213028	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4607220	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56373427	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57023828	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57247950	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57328322	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57363011	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58211757	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58219057	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60936127	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61161339	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62322190	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62322191	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62322197	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62322198	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62322199	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62322203	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62324235	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62324237	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62324238	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6830163	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6855675	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6856885	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs767226	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103087600-103095800	Weak transcription	Aorta	Aorta
2	chr4:103090200-103095600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:103090800-103095600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:103090800-103095600	Weak transcription	NH-A	brain
5	chr4:103091200-103093800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:103091200-103093800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:103091200-103095600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:103091200-103095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:103091200-103096000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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