Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11089592	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1894453	0.86[AMR][1000 genomes]
rs2008206	0.82[EUR][1000 genomes]
rs2413147	0.83[EUR][1000 genomes]
rs3788487	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3788489	0.83[EUR][1000 genomes]
rs3788490	0.83[EUR][1000 genomes]
rs3788491	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3788493	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3788494	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3788495	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3827340	0.83[EUR][1000 genomes]
rs4821091	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5994613	0.82[EUR][1000 genomes]
rs5998601	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5998604	0.88[ASN][1000 genomes]
rs5998607	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs743739	0.82[EUR][1000 genomes]
rs762885	0.83[EUR][1000 genomes]
rs9606988	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv588897	chr22:33116314-33139230	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33121800-33141400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:33128400-33135000	Enhancers	Fetal Thymus	thymus
3	chr22:33130600-33133800	Weak transcription	Spleen	Spleen
4	chr22:33130800-33134600	Enhancers	HepG2	liver
5	chr22:33132000-33133800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr22:33132000-33134200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr22:33132000-33134200	Weak transcription	Placenta	Placenta
8	chr22:33132000-33140600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr22:33132600-33134600	Enhancers	Thymus	Thymus
10	chr22:33133200-33133600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr22:33133200-33134200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr22:33133400-33134000	Weak transcription	HSMMtube	muscle

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