Variant report

Variant	rs5998696
Chromosome Location	chr22:33415869-33415870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11703017	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12158631	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12159195	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12160502	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4560230	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs5994652	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5994654	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5998689	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998694	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998697	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73162045	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73162064	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73162090	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73162099	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33402600-33419400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr22:33403000-33420000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr22:33403800-33417600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr22:33407400-33417000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr22:33410400-33417200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr22:33414400-33420600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr22:33414800-33417800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr22:33414800-33422000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr22:33414800-33430600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr22:33415000-33417200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr22:33415000-33434200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr22:33415800-33421800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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