Variant report

Variant	rs60018559
Chromosome Location	chr8:96229325-96229326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr8:96229221-96229625	GM12878	blood:	n/a	n/a
2	PBX3	chr8:96229287-96229511	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:96222002..96228732-chr8:96228964..96237755,16	MCF-7	breast:
2	chr8:96228952..96231247-chr8:96237951..96240683,3	MCF-7	breast:
3	chr8:96229120..96231629-chr8:96232251..96235212,3	MCF-7	breast:
4	chr8:96214009..96217041-chr8:96227079..96229399,3	K562	blood:

Variant related genes	Relation type
ENSG00000253351	TF binding region
ENSG00000253773	Chromatin interaction
ENSG00000253351	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73695425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv523655	chr8:96205920-96239113	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv16466	chr8:96206151-96243934	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv516035	chr8:96208726-96235451	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv465740	chr8:96211820-96235451	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv611758	chr8:96211820-96235451	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv6315	chr8:96216465-96261671	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv465741	chr8:96221122-96247835	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv611759	chr8:96221122-96247835	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	esv988068	chr8:96228317-96235618	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96214400-96233400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:96219400-96229600	Enhancers	Fetal Thymus	thymus
3	chr8:96219800-96251800	Enhancers	Primary B cells from peripheral blood	blood
4	chr8:96220600-96229400	Enhancers	Primary hematopoietic stem cells	blood
5	chr8:96220800-96229600	Enhancers	Primary B cells from cord blood	blood
6	chr8:96223600-96237200	Weak transcription	Fetal Intestine Small	intestine
7	chr8:96224200-96230000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr8:96225200-96229800	Weak transcription	Stomach Mucosa	stomach
9	chr8:96225400-96232800	Weak transcription	Esophagus	oesophagus
10	chr8:96225600-96236200	Weak transcription	Gastric	stomach
11	chr8:96226400-96229400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr8:96226600-96231800	Enhancers	K562	blood
13	chr8:96226800-96230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:96227000-96231200	Weak transcription	Psoas Muscle	Psoas
15	chr8:96227000-96232400	Weak transcription	Pancreas	Pancrea
16	chr8:96227200-96230200	Weak transcription	Fetal Heart	heart
17	chr8:96227400-96230400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr8:96227400-96232800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr8:96227400-96233600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr8:96227600-96229600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:96227600-96230200	Weak transcription	GM12878-XiMat	blood
22	chr8:96227600-96231200	Weak transcription	Adipose Nuclei	Adipose
23	chr8:96227600-96231200	Weak transcription	Right Ventricle	heart
24	chr8:96227600-96231600	Weak transcription	Right Atrium	heart
25	chr8:96227600-96232800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr8:96227800-96230400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr8:96227800-96233000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr8:96228000-96229800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr8:96228000-96238800	Weak transcription	Thymus	Thymus
30	chr8:96228400-96230200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr8:96228400-96231200	Weak transcription	Spleen	Spleen
32	chr8:96228400-96232200	Weak transcription	Primary T cells from cord blood	blood
33	chr8:96228800-96229800	Weak transcription	Fetal Muscle Leg	muscle
34	chr8:96228800-96230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:96228800-96230200	Weak transcription	Left Ventricle	heart
36	chr8:96228800-96230200	Enhancers	HepG2	liver
37	chr8:96228800-96230600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr8:96228800-96231200	Weak transcription	Placenta	Placenta
39	chr8:96228800-96231600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:96228800-96237600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr8:96229000-96235400	Weak transcription	Aorta	Aorta
42	chr8:96229200-96231000	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links