Variant report

Variant	rs60019113
Chromosome Location	chr4:7864130-7864131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878578	chr4:7841833-7969594	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3330221	chr4:7863700-7868089	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7848000-7872200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:7852600-7873600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:7856200-7872800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:7856400-7865600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:7856400-7865800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:7857200-7864800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:7857600-7873000	Weak transcription	Colonic Mucosa	Colon
8	chr4:7857800-7896400	Weak transcription	Spleen	Spleen
9	chr4:7859000-7865600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:7859400-7865600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:7859400-7865600	Genic enhancers	Osteobl	bone
12	chr4:7859600-7869000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:7859600-7869400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr4:7859800-7865600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr4:7859800-7865600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:7859800-7865600	Weak transcription	Brain Angular Gyrus	brain
17	chr4:7859800-7865600	Weak transcription	Stomach Mucosa	stomach
18	chr4:7859800-7872600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:7860000-7864800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:7860000-7864800	Genic enhancers	HSMMtube	muscle
21	chr4:7860000-7865600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:7860000-7865600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr4:7860200-7867600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:7860400-7865600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr4:7860400-7870200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr4:7860600-7865600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:7860800-7865600	Weak transcription	Gastric	stomach
28	chr4:7860800-7865600	Weak transcription	Lung	lung
29	chr4:7860800-7865600	Weak transcription	Pancreas	Pancrea
30	chr4:7860800-7869000	Weak transcription	Aorta	Aorta
31	chr4:7860800-7872800	Weak transcription	Right Ventricle	heart
32	chr4:7861200-7872800	Weak transcription	Psoas Muscle	Psoas
33	chr4:7861400-7865600	Weak transcription	HepG2	liver
34	chr4:7862000-7865200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr4:7862000-7865600	Genic enhancers	HSMM	muscle
36	chr4:7862200-7865000	Enhancers	H1 Cell Line	embryonic stem cell
37	chr4:7862200-7865200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:7862200-7865400	Enhancers	Fetal Brain Male	brain
39	chr4:7862400-7864200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:7862400-7864600	Enhancers	Brain Germinal Matrix	brain
41	chr4:7862400-7865400	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr4:7862600-7864600	Enhancers	NHDF-Ad	bronchial
43	chr4:7862600-7865000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr4:7862600-7865200	Enhancers	Fetal Lung	lung
45	chr4:7862600-7865600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr4:7862600-7870000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr4:7862800-7865600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr4:7862800-7865600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr4:7862800-7865600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr4:7862800-7865600	Weak transcription	Brain Inferior Temporal Lobe	brain

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