Variant report

Variant	rs60019696
Chromosome Location	chr6:150286089-150286090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150285227..150287207-chr6:150324215..150327395,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218358	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12110668	0.90[EUR][1000 genomes]
rs61742437	0.94[EUR][1000 genomes]
rs62439707	1.00[ASN][1000 genomes]
rs62439751	1.00[ASN][1000 genomes]
rs62439756	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441761	0.83[AFR][1000 genomes]
rs62441823	1.00[ASN][1000 genomes]
rs62441826	0.97[EUR][1000 genomes]
rs62441827	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441829	1.00[ASN][1000 genomes]
rs62441831	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441833	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441839	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441840	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62442281	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614653	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614656	0.92[EUR][1000 genomes]
rs7742307	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688944	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150284000-150286600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:150284200-150286200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:150284200-150286400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
4	chr6:150284200-150286600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
5	chr6:150284200-150286600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
6	chr6:150284200-150286600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
7	chr6:150284200-150286800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:150284200-150286800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr6:150284200-150286800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:150284200-150287000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr6:150284400-150286200	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
12	chr6:150284400-150286400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:150284400-150286400	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
14	chr6:150284400-150286400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
15	chr6:150284400-150286400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
16	chr6:150284400-150286400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
17	chr6:150284400-150286600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
19	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
20	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
22	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
23	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
24	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
25	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Placenta	Placenta
26	chr6:150284400-150286600	Bivalent/Poised TSS	Psoas Muscle	Psoas
27	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
28	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
30	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
31	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
32	chr6:150284600-150286600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
33	chr6:150284600-150286600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:150284600-150286600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:150284600-150286600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
36	chr6:150284600-150286800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:150284600-150286800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
38	chr6:150284600-150286800	Active TSS	HSMMtube	muscle
39	chr6:150284800-150286400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
41	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
44	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
45	chr6:150284800-150286600	Bivalent/Poised TSS	Left Ventricle	heart
46	chr6:150284800-150286800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
47	chr6:150284800-150286800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
48	chr6:150285000-150286200	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
49	chr6:150285000-150286200	Flanking Active TSS	Gastric	stomach
50	chr6:150285000-150286400	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood

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