Variant report

Variant rs6002534
Chromosome Location chr22:20913047-20913048
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:20886000-20915400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr22:20890800-20923000 Strong transcription Monocytes-CD14+_RO01746 blood
3 chr22:20903200-20913200 Genic enhancers Fetal Adrenal Gland Adrenal Gland
4 chr22:20903400-20915200 Strong transcription NHEK skin
5 chr22:20904200-20917200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr22:20905000-20923000 Strong transcription Primary monocytes fromperipheralblood blood
7 chr22:20905400-20913400 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
8 chr22:20905400-20913600 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
9 chr22:20905400-20914600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr22:20905800-20917800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr22:20906200-20913200 Strong transcription HUES64 Cell Line embryonic stem cell
12 chr22:20906400-20914400 Strong transcription HUES48 Cell Line embryonic stem cell
13 chr22:20906400-20914400 Strong transcription HUES6 Cell Line embryonic stem cell
14 chr22:20907400-20918000 Strong transcription Liver Liver
15 chr22:20907400-20921200 Weak transcription Small Intestine intestine
16 chr22:20908000-20913400 Genic enhancers Spleen Spleen
17 chr22:20908000-20914000 Strong transcription Rectal Smooth Muscle rectum
18 chr22:20908400-20922800 Strong transcription Fetal Intestine Large intestine
19 chr22:20908800-20913800 Strong transcription Fetal Kidney kidney
20 chr22:20909000-20913200 Genic enhancers Foreskin Melanocyte Primary Cells skin01 Skin
21 chr22:20909000-20914600 Strong transcription HepG2 liver
22 chr22:20909000-20921000 Strong transcription Rectal Mucosa Donor 29 rectum
23 chr22:20909200-20915600 Strong transcription Sigmoid Colon Sigmoid Colon
24 chr22:20909400-20914400 Strong transcription Brain Substantia Nigra brain
25 chr22:20909800-20914400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr22:20910000-20913400 Strong transcription Colonic Mucosa Colon
27 chr22:20910000-20916600 Strong transcription HMEC breast
28 chr22:20910200-20913200 Enhancers Skeletal Muscle Male skeletal muscle
29 chr22:20910200-20915200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr22:20910800-20913200 Strong transcription Fetal Brain Male brain
31 chr22:20910800-20916400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr22:20911400-20913200 Genic enhancers Lung lung
33 chr22:20911400-20914400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr22:20911600-20914400 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
35 chr22:20911800-20913600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr22:20911800-20913600 Weak transcription Stomach Mucosa stomach
37 chr22:20911800-20914000 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
38 chr22:20911800-20914200 Strong transcription Colon Smooth Muscle Colon
39 chr22:20911800-20914400 Strong transcription Brain Anterior Caudate brain
40 chr22:20911800-20914400 Strong transcription Duodenum Smooth Muscle Duodenum
41 chr22:20911800-20914600 Strong transcription Rectal Mucosa Donor 31 rectum
42 chr22:20911800-20914600 Strong transcription NH-A brain
43 chr22:20911800-20915000 Strong transcription Gastric stomach
44 chr22:20911800-20918800 Weak transcription iPS-15b Cell Line embryonic stem cell
45 chr22:20911800-20919400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr22:20911800-20919400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
47 chr22:20911800-20920600 Genic enhancers Primary T cells fromperipheralblood blood
48 chr22:20911800-20931000 Strong transcription Primary neutrophils fromperipheralblood blood
49 chr22:20912000-20914000 Strong transcription Brain Inferior Temporal Lobe brain
50 chr22:20912000-20914200 Strong transcription Brain Dorsolateral Prefrontal Cortex brain

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