Variant report

Variant	rs60029624
Chromosome Location	chr11:8121035-8121036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8027374..8028529-chr11:8120567..8121508,8	MCF-7	breast:
2	chr11:8027583..8028679-chr11:8120621..8121441,4	MCF-7	breast:
3	chr11:8027612..8028573-chr11:8120562..8121429,4	K562	blood:
4	chr11:8054420..8055367-chr11:8120731..8121254,3	K562	blood:
5	chr11:7914034..7914945-chr11:8120637..8121875,4	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16935778	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16935797	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7939737	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8105400-8122000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:8105800-8127400	Weak transcription	HepG2	liver
3	chr11:8106800-8122400	Weak transcription	Spleen	Spleen
4	chr11:8109000-8125400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:8112600-8129800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:8113200-8128600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:8114200-8122200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:8114400-8124000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr11:8114400-8125600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:8114400-8125800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:8114400-8128200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr11:8114400-8130000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:8114400-8133600	Weak transcription	Liver	Liver
14	chr11:8114600-8126800	Weak transcription	Fetal Heart	heart
15	chr11:8114800-8122600	Weak transcription	Esophagus	oesophagus
16	chr11:8114800-8122600	Weak transcription	Pancreas	Pancrea
17	chr11:8114800-8124600	Weak transcription	Small Intestine	intestine
18	chr11:8115200-8128800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:8115400-8129400	Strong transcription	Ovary	ovary
20	chr11:8115800-8128800	Strong transcription	Stomach Smooth Muscle	stomach
21	chr11:8115800-8129400	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr11:8116000-8122800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:8116000-8124600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:8116200-8125600	Weak transcription	Colonic Mucosa	Colon
25	chr11:8116200-8132000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:8116600-8122400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:8116600-8122400	Weak transcription	Gastric	stomach
28	chr11:8116800-8122400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:8117000-8157600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:8117200-8122400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:8117600-8122000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:8117600-8124800	Strong transcription	Brain Germinal Matrix	brain
33	chr11:8117800-8121800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:8117800-8121800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:8117800-8124800	Strong transcription	Fetal Intestine Small	intestine
36	chr11:8117800-8126000	Strong transcription	Fetal Muscle Leg	muscle
37	chr11:8117800-8126400	Strong transcription	Brain Anterior Caudate	brain
38	chr11:8117800-8126400	Strong transcription	Fetal Lung	lung
39	chr11:8117800-8128000	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr11:8118000-8121200	Weak transcription	Placenta	Placenta
41	chr11:8118000-8122200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:8118000-8123000	Strong transcription	Fetal Brain Male	brain
43	chr11:8118000-8126800	Strong transcription	Adipose Nuclei	Adipose
44	chr11:8118000-8129400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:8118000-8132600	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:8118200-8123600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:8118200-8123600	Strong transcription	Colon Smooth Muscle	Colon
48	chr11:8118200-8124200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:8118200-8124400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:8118200-8124800	Strong transcription	Aorta	Aorta

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