Variant report

Variant	rs60032561
Chromosome Location	chr16:69554981-69554982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69546010..69548545-chr16:69554522..69557315,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13335317	0.86[ASN][1000 genomes]
rs9938717	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431514	chr16:69428599-69581699	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv906821	chr16:69509506-69576894	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69547600-69555400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr16:69548200-69563000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr16:69548600-69556600	Weak transcription	K562	blood
4	chr16:69549200-69560000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr16:69549600-69563200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:69550000-69555000	Weak transcription	Hela-S3	cervix
7	chr16:69550000-69557000	Weak transcription	Placenta	Placenta
8	chr16:69552400-69563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr16:69554200-69556800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr16:69554400-69555800	Flanking Active TSS	GM12878-XiMat	blood
11	chr16:69554600-69555000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr16:69554600-69555000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr16:69554600-69555200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr16:69554600-69555200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
15	chr16:69554600-69555400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr16:69554600-69555600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:69554600-69555600	Enhancers	NHEK	skin
18	chr16:69554600-69555800	Flanking Active TSS	HepG2	liver
19	chr16:69554600-69556200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr16:69554600-69556200	Enhancers	HSMMtube	muscle
21	chr16:69554600-69557000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr16:69554800-69555000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
23	chr16:69554800-69555400	Enhancers	Primary hematopoietic stem cells	blood
24	chr16:69554800-69555400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr16:69554800-69555400	Enhancers	A549	lung
26	chr16:69554800-69555600	Enhancers	H1 Cell Line	embryonic stem cell
27	chr16:69554800-69555800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr16:69554800-69555800	Enhancers	HSMM	muscle
29	chr16:69554800-69556200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr16:69554800-69556200	Enhancers	Placenta Amnion	Placenta Amnion

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