Variant report

Variant	rs60032857
Chromosome Location	chr14:64705813-64705814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2987975	0.86[AMR][1000 genomes]
rs57378655	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58126300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59318135	0.82[EUR][1000 genomes]
rs61984406	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61984411	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61984412	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61984413	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61984416	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv902021	chr14:64647646-64715794	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64688800-64710600	Weak transcription	Fetal Heart	heart
2	chr14:64690200-64711200	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:64696200-64706000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:64696400-64708200	Weak transcription	Aorta	Aorta
5	chr14:64698800-64716600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:64699600-64708000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:64700000-64706400	Weak transcription	Right Ventricle	heart
8	chr14:64702200-64707400	Enhancers	Thymus	Thymus
9	chr14:64702600-64706800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:64702600-64715400	Weak transcription	Fetal Stomach	stomach
11	chr14:64703200-64706000	Enhancers	Primary B cells from peripheral blood	blood
12	chr14:64703200-64716800	Weak transcription	Brain Germinal Matrix	brain
13	chr14:64704800-64706000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:64704800-64706200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:64704800-64706200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr14:64704800-64706200	Enhancers	Fetal Thymus	thymus
17	chr14:64705200-64706000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:64705200-64706000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:64705200-64706000	Enhancers	Ovary	ovary
20	chr14:64705200-64706000	Enhancers	Pancreas	Pancrea
21	chr14:64705600-64706000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:64705600-64706000	Enhancers	Fetal Lung	lung
23	chr14:64705800-64706000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr14:64705800-64706000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:64705800-64706000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr14:64705800-64706000	Enhancers	Lung	lung
27	chr14:64705800-64706000	Enhancers	Spleen	Spleen

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