Variant report

Variant	rs60033499
Chromosome Location	chr15:74594212-74594213
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr15:74593837-74597400	SK-N-SH	brain:	n/a	chr15:74596129-74596145 chr15:74595747-74595760
2	ZNF143	chr15:74593911-74594256	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:74592716..74594518-chr15:74600269..74602108,2	K562	blood:
2	chr15:74428007..74429693-chr15:74592908..74594435,2	MCF-7	breast:
3	chr15:74592052..74594965-chr15:74595191..74598111,2	MCF-7	breast:
4	chr15:74419602..74420468-chr15:74593647..74594212,2	MCF-7	breast:
5	chr15:74422335..74425180-chr15:74593097..74594756,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261384	TF binding region
ENSG00000167178	Chromatin interaction
ENSG00000261384	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16967830	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57011055	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57067892	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74584200-74607400	Weak transcription	Right Atrium	heart
2	chr15:74591600-74597400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr15:74592400-74596600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:74592400-74596800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:74592800-74597000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
6	chr15:74592800-74597000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr15:74592800-74597000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr15:74593000-74594400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr15:74593000-74595400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr15:74593600-74594600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:74593600-74595000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr15:74593600-74596200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:74593800-74594800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:74593800-74596400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr15:74593800-74601000	Enhancers	Fetal Brain Female	brain
16	chr15:74593800-74601800	Enhancers	Fetal Brain Male	brain
17	chr15:74594000-74594400	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
18	chr15:74594000-74594400	Weak transcription	Spleen	Spleen
19	chr15:74594000-74597200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:74594000-74597800	Enhancers	Brain Germinal Matrix	brain
21	chr15:74594000-74602000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr15:74594200-74594400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
23	chr15:74594200-74594400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:74594200-74594400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:74594200-74596600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links