Variant report

Variant	rs60039229
Chromosome Location	chr7:139996630-139996631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12532105	0.93[ASN][1000 genomes]
rs12532353	0.93[ASN][1000 genomes]
rs2429211	0.88[ASN][1000 genomes]
rs2471319	0.88[ASN][1000 genomes]
rs4236486	0.82[ASN][1000 genomes]
rs4236487	0.82[ASN][1000 genomes]
rs4639430	0.93[ASN][1000 genomes]
rs62491830	0.93[ASN][1000 genomes]
rs62491833	0.93[ASN][1000 genomes]
rs62491835	0.93[ASN][1000 genomes]
rs62491836	0.84[ASN][1000 genomes]
rs6979854	0.91[ASN][1000 genomes]
rs7785579	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139975600-140002600	Weak transcription	Right Atrium	heart
2	chr7:139986800-140007800	Weak transcription	Fetal Intestine Small	intestine
3	chr7:139994600-139999800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr7:139994600-140004000	Weak transcription	K562	blood
5	chr7:139995000-140000200	Weak transcription	HepG2	liver
6	chr7:139995400-139999800	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links