Variant report

Variant	rs60052062
Chromosome Location	chr4:88338371-88338372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11936366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11936545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56102037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56401941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59716710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6818444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6844206	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839721	0.96[AFR][1000 genomes]
rs73839773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88329600-88342600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:88331800-88340400	Weak transcription	Stomach Mucosa	stomach
3	chr4:88332400-88339400	Weak transcription	Fetal Intestine Large	intestine
4	chr4:88334600-88342800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:88336400-88340600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr4:88337200-88338600	Enhancers	Duodenum Mucosa	Duodenum
7	chr4:88337200-88340600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:88337400-88340600	Enhancers	Liver	Liver
9	chr4:88337800-88340400	Enhancers	HepG2	liver
10	chr4:88338200-88340400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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