Variant report

Variant	rs6005437
Chromosome Location	chr22:27837974-27837975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:27832758..27834628-chr22:27836553..27838416,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10222263	0.90[ASN][1000 genomes]
rs16986845	0.90[ASN][1000 genomes]
rs56363846	0.90[ASN][1000 genomes]
rs5762147	0.85[ASN][1000 genomes]
rs5997254	0.90[ASN][1000 genomes]
rs73158493	0.90[ASN][1000 genomes]
rs73158499	0.90[ASN][1000 genomes]
rs73158500	0.90[ASN][1000 genomes]
rs73158501	0.90[ASN][1000 genomes]
rs73160503	0.90[ASN][1000 genomes]
rs73160510	0.90[ASN][1000 genomes]
rs8137037	0.90[ASN][1000 genomes]
rs879342	0.90[ASN][1000 genomes]
rs9620697	0.90[ASN][1000 genomes]
rs9620698	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv834167	chr22:27758395-27910985	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv459864	chr22:27760086-27865344	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv588875	chr22:27760086-27865344	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv471192	chr22:27821656-27865344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27829600-27844000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr22:27832400-27838800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr22:27832800-27843400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr22:27832800-27844000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr22:27833000-27838600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr22:27833800-27840200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr22:27834800-27839600	Weak transcription	Right Atrium	heart
8	chr22:27835000-27838200	Enhancers	Brain Germinal Matrix	brain
9	chr22:27835000-27838400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr22:27835000-27841800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr22:27835600-27838600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr22:27835800-27840200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr22:27836200-27838000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr22:27836400-27839000	Enhancers	Fetal Brain Male	brain
15	chr22:27837000-27838600	Enhancers	Fetal Brain Female	brain
16	chr22:27837200-27840200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr22:27837400-27838000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr22:27837400-27838800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr22:27837400-27840000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr22:27837400-27840000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr22:27837400-27840200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr22:27837400-27840200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr22:27837600-27838800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr22:27837600-27839800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr22:27837800-27838400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
26	chr22:27837800-27838400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr22:27837800-27838800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr22:27837800-27839800	Bivalent Enhancer	Fetal Muscle Leg	muscle
29	chr22:27837800-27840200	Bivalent Enhancer	Fetal Stomach	stomach

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