The 2.0 version of rSNPBase

Variant report

Variant rs6005710
Chromosome Location chr22:28473465-28473466
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:28449600-28479200 Weak transcription Brain Germinal Matrix brain
2 chr22:28449600-28488200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr22:28466400-28489800 Weak transcription Fetal Brain Male brain
4 chr22:28466600-28503600 Weak transcription Hela-S3 cervix
5 chr22:28468600-28477200 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr22:28468600-28489800 Weak transcription Fetal Kidney kidney
7 chr22:28468800-28480000 Weak transcription Fetal Muscle Trunk muscle
8 chr22:28469000-28480000 Weak transcription Fetal Brain Female brain
9 chr22:28470000-28474000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr22:28470000-28475000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
11 chr22:28470000-28486800 Weak transcription Fetal Adrenal Gland Adrenal Gland
12 chr22:28470800-28474200 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr22:28471400-28474000 Enhancers HepG2 liver
14 chr22:28471600-28487400 Weak transcription Brain Hippocampus Middle brain
15 chr22:28471600-28491800 Weak transcription Stomach Smooth Muscle stomach
16 chr22:28471800-28479600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr22:28471800-28486600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr22:28471800-28486800 Weak transcription Adipose Nuclei Adipose
19 chr22:28471800-28488400 Weak transcription Left Ventricle heart
20 chr22:28471800-28491400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr22:28471800-28492000 Weak transcription Aorta Aorta
22 chr22:28472000-28479200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr22:28472000-28479600 Weak transcription Fetal Stomach stomach
24 chr22:28472000-28480000 Weak transcription Fetal Muscle Leg muscle
25 chr22:28472000-28480000 Weak transcription Ovary ovary
26 chr22:28472000-28487400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr22:28472000-28489600 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr22:28472000-28489800 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr22:28472000-28494800 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr22:28472000-28499000 Weak transcription NHDF-Ad bronchial
31 chr22:28472200-28480000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr22:28472200-28498600 Weak transcription Colon Smooth Muscle Colon
33 chr22:28472400-28479600 Weak transcription Fetal Intestine Small intestine
34 chr22:28472400-28494200 Weak transcription Duodenum Mucosa Duodenum
35 chr22:28472800-28474400 Weak transcription Fetal Heart heart
36 chr22:28472800-28495400 Weak transcription Pancreas Pancrea
37 chr22:28472800-28501000 Weak transcription Gastric stomach
38 chr22:28473200-28473600 Enhancers Fetal Lung lung
39 chr22:28473200-28477000 Strong transcription Dnd41 blood

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Last update: Aug 31, 2015