Variant report

Variant	rs6005761
Chromosome Location	chr22:28729588-28729589
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12160801	1.00[AFR][1000 genomes]
rs5997353	1.00[AFR][1000 genomes]
rs5997356	1.00[AMR][1000 genomes]
rs6005753	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28724800-28729600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr22:28726200-28737400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr22:28727600-28729600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr22:28727800-28729600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr22:28728200-28729600	Enhancers	Fetal Lung	lung
6	chr22:28728400-28729600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr22:28728400-28729600	Enhancers	Brain Anterior Caudate	brain
8	chr22:28728800-28729600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr22:28728800-28729600	Enhancers	Brain Angular Gyrus	brain
10	chr22:28728800-28729800	Enhancers	Fetal Heart	heart
11	chr22:28729000-28729600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr22:28729000-28736600	Weak transcription	Brain Substantia Nigra	brain
13	chr22:28729200-28729600	Enhancers	HepG2	liver
14	chr22:28729400-28729600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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