The 2.0 version of rSNPBase

Variant report

Variant rs6005998
Chromosome Location chr22:29520632-29520633
allele A/C/G
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:29483400-29550200 Weak transcription Rectal Smooth Muscle rectum
2 chr22:29488400-29521200 Weak transcription Lung lung
3 chr22:29490400-29539800 Weak transcription Psoas Muscle Psoas
4 chr22:29491200-29521200 Weak transcription Colonic Mucosa Colon
5 chr22:29491600-29522200 Weak transcription Liver Liver
6 chr22:29493200-29521000 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr22:29493200-29521200 Weak transcription Pancreas Pancrea
8 chr22:29493200-29536400 Weak transcription ES-WA7 Cell Line embryonic stem cell
9 chr22:29504800-29521800 Weak transcription NHEK skin
10 chr22:29505000-29521000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr22:29505800-29533000 Weak transcription Placenta Amnion Placenta Amnion
12 chr22:29506000-29521000 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr22:29506400-29521000 Weak transcription Right Ventricle heart
14 chr22:29506400-29522200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr22:29506400-29522400 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr22:29508200-29537200 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr22:29509400-29524400 Weak transcription NHDF-Ad bronchial
18 chr22:29509400-29525000 Weak transcription Osteobl bone
19 chr22:29510000-29525400 Weak transcription Brain Anterior Caudate brain
20 chr22:29510000-29528200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr22:29510000-29530800 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr22:29510000-29531000 Weak transcription Brain Hippocampus Middle brain
23 chr22:29510200-29521000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr22:29510200-29531000 Weak transcription Brain Substantia Nigra brain
25 chr22:29512400-29522200 Weak transcription Small Intestine intestine
26 chr22:29512600-29533000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr22:29514200-29521200 Weak transcription Left Ventricle heart
28 chr22:29514200-29521400 Weak transcription Stomach Smooth Muscle stomach
29 chr22:29514200-29522200 Weak transcription Duodenum Mucosa Duodenum
30 chr22:29514400-29532800 Weak transcription Gastric stomach
31 chr22:29514600-29521000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr22:29514600-29521800 Weak transcription Placenta Placenta
33 chr22:29514600-29522200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr22:29514800-29521600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr22:29515000-29521000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr22:29515000-29533000 Weak transcription Colon Smooth Muscle Colon
37 chr22:29515600-29533800 Weak transcription Brain Germinal Matrix brain
38 chr22:29516600-29521800 Weak transcription Brain Angular Gyrus brain
39 chr22:29516600-29522000 Weak transcription Brain Inferior Temporal Lobe brain
40 chr22:29516600-29531000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
41 chr22:29516800-29521000 Weak transcription Fetal Adrenal Gland Adrenal Gland
42 chr22:29516800-29521000 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr22:29516800-29521200 Weak transcription Fetal Intestine Large intestine
44 chr22:29516800-29522200 Weak transcription Pancreatic Islets Pancreatic Islet
45 chr22:29516800-29522400 Weak transcription Adipose Nuclei Adipose
46 chr22:29516800-29522400 Weak transcription Fetal Kidney kidney
47 chr22:29516800-29523000 Strong transcription Fetal Lung lung
48 chr22:29516800-29530800 Weak transcription Aorta Aorta
49 chr22:29517000-29521200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr22:29517200-29546200 Strong transcription Dnd41 blood

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Last update: Aug 31, 2015