Variant report

Variant	rs6006214
Chromosome Location	chr22:30035727-30035728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12157558	1.00[AFR][1000 genomes]
rs5997498	1.00[AFR][1000 genomes]
rs6006207	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529742	chr22:29677909-30274388	Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1062373	chr22:29826745-30092448	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv544676	chr22:29826745-30092448	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv834172	chr22:29899036-30057948	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30014400-30085800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:30018000-30069200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:30020200-30057000	Weak transcription	Psoas Muscle	Psoas
4	chr22:30020200-30064200	Weak transcription	Small Intestine	intestine
5	chr22:30020800-30097000	Weak transcription	Stomach Mucosa	stomach
6	chr22:30021800-30041600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr22:30022000-30037200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr22:30022000-30038400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr22:30022200-30053400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr22:30023000-30037400	Weak transcription	Hela-S3	cervix
11	chr22:30023200-30038600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr22:30023600-30037800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr22:30023800-30038200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr22:30023800-30038600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr22:30024000-30037400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr22:30024200-30038200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr22:30026400-30038000	Weak transcription	Brain Angular Gyrus	brain
18	chr22:30026800-30038200	Weak transcription	Spleen	Spleen
19	chr22:30026800-30055800	Weak transcription	Gastric	stomach
20	chr22:30027200-30044400	Weak transcription	Brain Substantia Nigra	brain
21	chr22:30027400-30038000	Weak transcription	Colon Smooth Muscle	Colon
22	chr22:30027600-30038200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr22:30027600-30057200	Weak transcription	Brain Hippocampus Middle	brain
24	chr22:30027800-30056000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr22:30028400-30037600	Weak transcription	Fetal Intestine Large	intestine
26	chr22:30028400-30044400	Weak transcription	Pancreas	Pancrea
27	chr22:30028800-30037400	Weak transcription	HepG2	liver
28	chr22:30029600-30053800	Weak transcription	Esophagus	oesophagus
29	chr22:30030000-30038400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr22:30030200-30036400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr22:30030400-30037200	Weak transcription	NHDF-Ad	bronchial
32	chr22:30030400-30038000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr22:30031200-30037600	Weak transcription	A549	lung
34	chr22:30032200-30047000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr22:30032200-30057000	Weak transcription	Colonic Mucosa	Colon
36	chr22:30032200-30070000	Weak transcription	Fetal Brain Male	brain
37	chr22:30032400-30039200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr22:30032400-30039400	Strong transcription	Primary T cells from cord blood	blood
39	chr22:30032600-30036600	Strong transcription	Fetal Thymus	thymus
40	chr22:30032600-30036600	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr22:30032600-30036800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr22:30032600-30036800	Strong transcription	Dnd41	blood
43	chr22:30032600-30039200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr22:30032800-30036600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr22:30032800-30036600	Strong transcription	Stomach Smooth Muscle	stomach
46	chr22:30032800-30037200	Weak transcription	Fetal Kidney	kidney
47	chr22:30032800-30037800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr22:30032800-30039200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr22:30032800-30039400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr22:30033000-30036600	Strong transcription	Fetal Muscle Leg	muscle

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