Variant report

Variant	rs6006353
Chromosome Location	chr22:30496840-30496841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12160803	1.00[AFR][1000 genomes]
rs5997554	1.00[AFR][1000 genomes]
rs5997569	1.00[AFR][1000 genomes]
rs6006312	1.00[AFR][1000 genomes]
rs6006316	1.00[AFR][1000 genomes]
rs6006337	1.00[AFR][1000 genomes]
rs61737778	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv588884	chr22:30494371-30590026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30493200-30500200	Enhancers	Dnd41	blood
2	chr22:30494400-30497400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr22:30495200-30498000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr22:30496400-30497000	Enhancers	Primary T cells from cord blood	blood
5	chr22:30496400-30497600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr22:30496400-30498000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr22:30496400-30498200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr22:30496600-30497200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr22:30496600-30497400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr22:30496600-30497400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr22:30496600-30497400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr22:30496600-30500200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr22:30496600-30500600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr22:30496800-30497200	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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