Variant report

Variant	rs6006357
Chromosome Location	chr22:30505221-30505222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30504306..30505754-chr22:30651396..30652476,12	MCF-7	breast:
2	chr22:30502959..30506188-chr22:30648757..30654246,8	MCF-7	breast:
3	chr22:30504373..30506765-chr22:30681335..30683680,2	MCF-7	breast:
4	chr22:30502809..30506298-chr22:30639806..30643736,4	MCF-7	breast:
5	chr22:30504280..30505360-chr22:30651538..30652426,8	K562	blood:
6	chr22:30504448..30505337-chr22:30651737..30652444,5	MCF-7	breast:
7	chr22:30504874..30510163-chr22:30602955..30605471,5	MCF-7	breast:
8	chr22:30500122..30506829-chr22:30640771..30648697,14	MCF-7	breast:
9	chr22:30503068..30507568-chr22:30652252..30654579,5	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000225676	Chromatin interaction
ENSG00000128342	Chromatin interaction
ENSG00000239282	Chromatin interaction
ENSG00000268812	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs5997557	1.00[AFR][1000 genomes]
rs5997566	1.00[AFR][1000 genomes]
rs5997570	1.00[AFR][1000 genomes]
rs6006311	1.00[AFR][1000 genomes]
rs6006313	1.00[AFR][1000 genomes]
rs6006350	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv588884	chr22:30494371-30590026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30501400-30505800	Enhancers	A549	lung
2	chr22:30501800-30511800	Weak transcription	Osteobl	bone
3	chr22:30504000-30505600	Enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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