Variant report

Variant	rs6006383
Chromosome Location	chr22:30559680-30559681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11552852	0.89[EUR][1000 genomes]
rs16988120	0.82[EUR][1000 genomes]
rs16988143	0.82[EUR][1000 genomes]
rs16988148	0.80[EUR][1000 genomes]
rs16988149	0.82[EUR][1000 genomes]
rs16988244	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16988291	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16988303	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16988304	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16988333	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17648208	0.95[EUR][1000 genomes]
rs1807726	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2412980	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2412981	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36588	0.82[EUR][1000 genomes]
rs36589	0.82[EUR][1000 genomes]
rs36592	0.82[EUR][1000 genomes]
rs36593	0.82[EUR][1000 genomes]
rs36597	0.80[EUR][1000 genomes]
rs36599	0.82[EUR][1000 genomes]
rs36602	0.82[EUR][1000 genomes]
rs36603	0.82[EUR][1000 genomes]
rs39713	0.80[EUR][1000 genomes]
rs41278853	0.93[EUR][1000 genomes]
rs41281623	0.91[EUR][1000 genomes]
rs41281633	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4482600	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4482601	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs45629133	0.87[EUR][1000 genomes]
rs4823078	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55645000	0.82[EUR][1000 genomes]
rs56392746	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56406718	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57348516	0.82[EUR][1000 genomes]
rs5753038	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5753039	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5753042	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5753043	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5763855	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5763856	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5763857	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5763858	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5763870	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5763873	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5763878	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58162368	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60759987	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6518681	0.95[EUR][1000 genomes]
rs6519802	0.87[EUR][1000 genomes]
rs6519805	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs713916	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7284951	0.82[EUR][1000 genomes]
rs7285585	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7286205	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7286441	0.82[EUR][1000 genomes]
rs7287233	0.82[EUR][1000 genomes]
rs7290175	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs737901	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73883344	0.82[EUR][1000 genomes]
rs73883354	0.84[EUR][1000 genomes]
rs73883355	0.84[EUR][1000 genomes]
rs73883359	0.89[EUR][1000 genomes]
rs73883360	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73883363	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73883367	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73883370	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73883374	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73883375	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73883377	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73883378	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8141471	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs962322	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv588884	chr22:30494371-30590026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv834173	chr22:30515092-30658277	Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv527188	chr22:30529741-30581722	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30557600-30563400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr22:30558200-30560800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr22:30558200-30563000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr22:30558200-30563000	Weak transcription	Thymus	Thymus
5	chr22:30558200-30563800	Weak transcription	Dnd41	blood
6	chr22:30558400-30564400	Weak transcription	Fetal Thymus	thymus

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