Variant report

Variant	rs60065332
Chromosome Location	chr14:72108427-72108428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:72064708..72067406-chr14:72108018..72110332,2	K562	blood:
2	chr14:72104934..72106796-chr14:72107368..72110088,2	MCF-7	breast:
3	chr14:72107137..72109592-chr14:72112007..72114588,3	K562	blood:

Variant related genes	Relation type
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12147154	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1473130	0.80[EUR][1000 genomes]
rs17092070	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72729956	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72729973	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72073200-72137800	Weak transcription	Esophagus	oesophagus
2	chr14:72073400-72111000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:72082600-72125000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr14:72083000-72111000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:72083600-72118000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:72083600-72128200	Weak transcription	Spleen	Spleen
7	chr14:72083800-72109800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:72084000-72111800	Weak transcription	Thymus	Thymus
9	chr14:72087400-72113400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr14:72088200-72108800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:72088200-72159600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:72090000-72124200	Weak transcription	Hela-S3	cervix
13	chr14:72091000-72114000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:72091000-72117000	Weak transcription	Liver	Liver
15	chr14:72091000-72127400	Weak transcription	Pancreas	Pancrea
16	chr14:72091200-72109000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:72091200-72109600	Weak transcription	Brain Anterior Caudate	brain
18	chr14:72091200-72115200	Weak transcription	HepG2	liver
19	chr14:72091600-72108800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr14:72091600-72109600	Weak transcription	HSMMtube	muscle
21	chr14:72091600-72116800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr14:72091600-72117000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:72091600-72117200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr14:72093400-72109000	Weak transcription	Fetal Lung	lung
25	chr14:72097200-72109400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:72099400-72117200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr14:72099400-72118400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr14:72099800-72108800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr14:72099800-72111400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr14:72100000-72108800	Weak transcription	Primary B cells from cord blood	blood
31	chr14:72100000-72108800	Weak transcription	Aorta	Aorta
32	chr14:72100000-72117000	Weak transcription	Dnd41	blood
33	chr14:72100000-72118400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr14:72101400-72108800	Weak transcription	Osteobl	bone
35	chr14:72101400-72113200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr14:72101600-72117000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr14:72103400-72108800	Weak transcription	HSMM	muscle
38	chr14:72103600-72108800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr14:72104200-72113800	Weak transcription	Fetal Heart	heart
40	chr14:72104600-72113200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr14:72105600-72113400	Weak transcription	HMEC	breast
42	chr14:72105800-72113600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr14:72106000-72113400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:72106000-72117000	Weak transcription	Primary T cells from cord blood	blood
45	chr14:72106000-72117000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr14:72106000-72125000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:72106200-72109000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr14:72106200-72109000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:72106200-72112000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr14:72107800-72110000	ZNF genes & repeats	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links