Variant report

Variant	rs60077789
Chromosome Location	chr8:20145931-20145932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:20145880-20146030	BE2_C	brain:	n/a	n/a
2	CTCF	chr8:20145900-20146050	HCPEpiC	choroid plexus:	n/a	n/a
3	FOXP2	chr8:20145513-20146040	PFSK-1	brain:	n/a	n/a
4	REST	chr8:20145242-20146144	H1-neurons	neurons:	n/a	chr8:20145568-20145581 chr8:20145574-20145587
5	POLR2A	chr8:20145417-20146048	H1-neurons	neurons:	n/a	n/a
6	FOXP2	chr8:20145508-20146008	PFSK-1	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:20144491..20147216-chr8:20149456..20152230,2	K562	blood:

Variant related genes	Relation type
LZTS1-AS1	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11204109	0.87[ASN][1000 genomes]
rs12114422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12545373	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12546414	0.92[ASN][1000 genomes]
rs12547641	0.85[ASN][1000 genomes]
rs12675554	0.89[ASN][1000 genomes]
rs12677666	0.91[ASN][1000 genomes]
rs62499991	0.93[ASN][1000 genomes]
rs62499992	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs62499993	0.96[ASN][1000 genomes]
rs7016149	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv890644	chr8:20138477-20162213	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20141800-20146600	Weak transcription	HSMMtube	muscle
2	chr8:20142000-20147400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr8:20142400-20146800	Weak transcription	NHLF	lung
4	chr8:20144200-20154800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:20144400-20146800	Weak transcription	Fetal Brain Male	brain
6	chr8:20144800-20146200	Genic enhancers	Dnd41	blood
7	chr8:20144800-20146800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:20144800-20147400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:20144800-20150400	Enhancers	Fetal Muscle Leg	muscle
10	chr8:20145000-20146800	Weak transcription	HSMM	muscle
11	chr8:20145000-20148600	Enhancers	Fetal Thymus	thymus
12	chr8:20145200-20146000	Bivalent Enhancer	Fetal Stomach	stomach
13	chr8:20145200-20147200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr8:20145200-20147200	Weak transcription	Fetal Kidney	kidney
15	chr8:20145400-20146000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr8:20145400-20146000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr8:20145400-20146000	Enhancers	Primary T cells from cord blood	blood
18	chr8:20145400-20146000	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr8:20145400-20146000	Enhancers	Thymus	Thymus
20	chr8:20145400-20146000	Enhancers	HMEC	breast
21	chr8:20145400-20146200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr8:20145400-20146200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:20145400-20146200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:20145400-20146200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr8:20145400-20146400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:20145400-20146400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr8:20145400-20146400	Enhancers	Esophagus	oesophagus
28	chr8:20145400-20146800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:20145400-20147000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:20145400-20147200	Enhancers	H1 Cell Line	embryonic stem cell
31	chr8:20145400-20147200	Enhancers	Fetal Intestine Small	intestine
32	chr8:20145400-20147800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr8:20145400-20148600	Enhancers	Fetal Lung	lung
34	chr8:20145400-20148600	Enhancers	Placenta	Placenta
35	chr8:20145600-20146000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:20145600-20146000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
37	chr8:20145600-20146200	Enhancers	H9 Cell Line	embryonic stem cell
38	chr8:20145600-20146200	Bivalent Enhancer	Brain Germinal Matrix	brain
39	chr8:20145600-20146400	Enhancers	Right Ventricle	heart
40	chr8:20145600-20146800	Weak transcription	Fetal Intestine Large	intestine
41	chr8:20145600-20147000	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr8:20145600-20147200	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr8:20145600-20147400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:20145600-20148200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr8:20145600-20148600	Enhancers	Ovary	ovary
46	chr8:20145800-20146000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr8:20145800-20146000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr8:20145800-20146000	Bivalent Enhancer	Adipose Nuclei	Adipose
49	chr8:20145800-20146000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
50	chr8:20145800-20146000	Enhancers	NHDF-Ad	bronchial

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