Variant report

Variant	rs60079061
Chromosome Location	chr21:39699796-39699797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39699602..39701769-chr21:39715637..39717259,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16996216	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058886	chr21:39341560-39799638	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv432152	chr21:39362130-39730730	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv834098	chr21:39691898-39845254	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39686800-39723000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:39690400-39703000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr21:39692000-39705600	Weak transcription	NHLF	lung
4	chr21:39694200-39701200	Enhancers	Osteobl	bone
5	chr21:39694200-39702600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr21:39694400-39700400	Enhancers	Fetal Muscle Leg	muscle
7	chr21:39694400-39702200	Enhancers	HSMM	muscle
8	chr21:39694600-39700400	Enhancers	HSMMtube	muscle
9	chr21:39695200-39703200	Enhancers	NHDF-Ad	bronchial
10	chr21:39696800-39700400	Enhancers	Hela-S3	cervix
11	chr21:39697400-39703400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr21:39699200-39700200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr21:39699200-39700400	Enhancers	NH-A	brain
14	chr21:39699200-39700600	Weak transcription	Esophagus	oesophagus
15	chr21:39699400-39699800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr21:39699400-39714600	Weak transcription	Stomach Mucosa	stomach
17	chr21:39699600-39699800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr21:39699600-39700000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr21:39699600-39700000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr21:39699600-39700000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr21:39699600-39703200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr21:39699600-39713400	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links