Variant report

Variant	rs60082801
Chromosome Location	chr3:115912116-115912117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56964012	1.00[EUR][1000 genomes]
rs58820760	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60062033	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61244371	1.00[EUR][1000 genomes]
rs72961512	1.00[EUR][1000 genomes]
rs72961514	1.00[EUR][1000 genomes]
rs72961517	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2755046	chr3:115818840-115942952	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115907400-115916400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:115907800-115919800	Weak transcription	Brain Angular Gyrus	brain
3	chr3:115911200-115912800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:115911400-115916800	Weak transcription	Brain Anterior Caudate	brain
5	chr3:115911400-115919400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:115911400-115919400	Weak transcription	Brain Substantia Nigra	brain
7	chr3:115911600-115912600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:115911800-115912800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:115912000-115913000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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