Variant report

Variant	rs60087848
Chromosome Location	chr5:14623001-14623002
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10072696	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13355896	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17296475	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17296541	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17362465	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17571949	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2435064	0.93[EUR][1000 genomes]
rs3845281	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58401870	0.83[EUR][1000 genomes]
rs73046720	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73046727	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73046737	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73046740	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73046743	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73046748	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1032951	chr5:14529579-14667342	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs60087848	FAM105B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14610800-14624000	Weak transcription	Lung	lung
2	chr5:14612200-14623600	Weak transcription	Placenta	Placenta
3	chr5:14616800-14625400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:14619800-14626200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:14622800-14625000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:14623000-14630200	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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