Variant report

Variant	rs60089093
Chromosome Location	chr4:55188927-55188928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55188651..55189879-chr4:55299577..55300637,10	MCF-7	breast:
2	chr4:55188829..55189372-chr4:55706928..55707723,2	MCF-7	breast:
3	chr4:55188876..55189604-chr4:55241739..55242312,2	MCF-7	breast:
4	chr4:55188755..55189636-chr4:55299369..55300499,5	MCF-7	breast:
5	chr4:55188742..55189647-chr4:55306683..55307683,5	K562	blood:
6	chr4:55188891..55189478-chr4:55307244..55307822,2	MCF-7	breast:
7	chr4:55188790..55189653-chr4:55306542..55307230,3	MCF-7	breast:
8	chr4:55188918..55189432-chr4:55241699..55242360,2	MCF-7	breast:
9	chr4:55188871..55189578-chr4:55299616..55300145,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1507959	1.00[AMR][1000 genomes]
rs1507960	1.00[AMR][1000 genomes]
rs1562057	1.00[AMR][1000 genomes]
rs2008891	1.00[AMR][1000 genomes]
rs2008894	1.00[AMR][1000 genomes]
rs4864886	1.00[AMR][1000 genomes]
rs4864888	1.00[AMR][1000 genomes]
rs6812224	1.00[AMR][1000 genomes]
rs6841931	1.00[AMR][1000 genomes]
rs6851205	1.00[AMR][1000 genomes]
rs6855353	1.00[AMR][1000 genomes]
rs7356494	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1001094	chr4:55131860-55189739	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv4341	chr4:55172085-55217655	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55183000-55189200	Weak transcription	Brain Anterior Caudate	brain
2	chr4:55183000-55190000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:55188800-55189600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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