Variant report

Variant	rs60095771
Chromosome Location	chr11:63900590-63900591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63861047..63863678-chr11:63899191..63900819,2	MCF-7	breast:
2	chr11:63899428..63902376-chr11:63903166..63906655,5	MCF-7	breast:
3	chr11:63891354..63894679-chr11:63899764..63902177,3	MCF-7	breast:
4	chr11:63781000..63782965-chr11:63900428..63903008,2	MCF-7	breast:
5	chr11:63894649..63896789-chr11:63898167..63901854,5	MCF-7	breast:
6	chr11:63853633..63855167-chr11:63899619..63902244,2	MCF-7	breast:
7	chr11:63894757..63897753-chr11:63898307..63901137,2	K562	blood:
8	chr11:63806792..63809635-chr11:63899268..63901371,2	K562	blood:
9	chr11:63898040..63900955-chr11:63917513..63921535,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000133315	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2286612	0.83[ASN][1000 genomes]
rs57052719	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58009222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58312494	1.00[EUR][1000 genomes]
rs58694215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58747362	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59747132	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60571265	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61143549	1.00[ASN][1000 genomes]
rs61629200	0.88[ASN][1000 genomes]
rs7950596	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
3	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
4	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
5	nsv832184	chr11:63787702-63925084	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
7	nsv897659	chr11:63813470-63907079	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv832185	chr11:63819946-63963532	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	89 gene(s)	inside rSNPs	diseases
9	nsv469961	chr11:63822940-64085967	Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
10	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
11	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
12	nsv356	chr11:63868847-63913129	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
14	esv1801661	chr11:63894054-63937949	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63885600-63911200	Weak transcription	Gastric	stomach
2	chr11:63886800-63908600	Weak transcription	Ovary	ovary
3	chr11:63890600-63913600	Weak transcription	Esophagus	oesophagus
4	chr11:63892000-63915800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:63892400-63904400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:63895800-63920000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:63896600-63901200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:63896600-63906600	Weak transcription	Spleen	Spleen
9	chr11:63896600-63909000	Weak transcription	Adipose Nuclei	Adipose
10	chr11:63897200-63901600	Enhancers	HepG2	liver
11	chr11:63897200-63918400	Weak transcription	Dnd41	blood
12	chr11:63897400-63901400	Enhancers	Fetal Brain Male	brain
13	chr11:63897800-63900600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:63897800-63900800	Enhancers	Fetal Muscle Leg	muscle
15	chr11:63898000-63901800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr11:63898200-63901000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr11:63898200-63901200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:63898200-63902200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:63898400-63901000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:63898400-63902200	Enhancers	Primary hematopoietic stem cells	blood
21	chr11:63898400-63902600	Enhancers	Fetal Thymus	thymus
22	chr11:63898600-63900800	Enhancers	Brain Substantia Nigra	brain
23	chr11:63898600-63902000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr11:63898800-63900800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:63898800-63916400	Weak transcription	Hela-S3	cervix
26	chr11:63899000-63901000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:63899200-63900800	Enhancers	Brain Angular Gyrus	brain
28	chr11:63899200-63900800	Enhancers	Brain Anterior Caudate	brain
29	chr11:63899200-63900800	Enhancers	Brain Cingulate Gyrus	brain
30	chr11:63899200-63900800	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr11:63899200-63900800	Enhancers	Brain Hippocampus Middle	brain
32	chr11:63899200-63900800	Enhancers	Fetal Lung	lung
33	chr11:63899200-63900800	Enhancers	Right Ventricle	heart
34	chr11:63899200-63901600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:63899200-63903600	Enhancers	Left Ventricle	heart
36	chr11:63899400-63901000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:63899400-63901000	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr11:63899400-63901200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:63899600-63900800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:63899600-63900800	Enhancers	Liver	Liver
41	chr11:63899600-63900800	Genic enhancers	Fetal Stomach	stomach
42	chr11:63899800-63901600	Enhancers	Fetal Brain Female	brain
43	chr11:63899800-63902200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:63900000-63900600	Enhancers	Psoas Muscle	Psoas
45	chr11:63900000-63900600	Weak transcription	Right Atrium	heart
46	chr11:63900200-63900800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
47	chr11:63900200-63903400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:63900200-63904800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
49	chr11:63900200-63931800	Weak transcription	Lung	lung
50	chr11:63900400-63900600	Genic enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links