Variant report

Variant	rs60097171
Chromosome Location	chr2:20755234-20755235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20751923..20755343-chr2:20761931..20764974,3	MCF-7	breast:
2	chr2:20748039..20751018-chr2:20753452..20755929,2	MCF-7	breast:
3	chr2:20725414..20727040-chr2:20754187..20756367,2	MCF-7	breast:
4	chr2:20753755..20755375-chr2:20760184..20762620,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11885770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873717	chr2:20625174-20756900	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv873719	chr2:20628882-20756900	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv833537	chr2:20630092-20826816	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
4	nsv873720	chr2:20645835-20756900	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
5	nsv873721	chr2:20645835-20759789	Enhancers Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv873724	chr2:20678000-20757286	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv833548	chr2:20682073-20864078	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20746600-20757400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20751200-20768600	Weak transcription	Aorta	Aorta
3	chr2:20751600-20756400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:20751600-20756400	Weak transcription	Lung	lung
5	chr2:20751600-20762600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:20751600-20763000	Weak transcription	Left Ventricle	heart
7	chr2:20751600-20772600	Weak transcription	Brain Angular Gyrus	brain
8	chr2:20751800-20756600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:20752000-20757400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:20752000-20761000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:20752000-20762600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:20752000-20762800	Weak transcription	Right Ventricle	heart
13	chr2:20752400-20755600	Enhancers	HepG2	liver
14	chr2:20754600-20755400	Enhancers	Fetal Intestine Small	intestine
15	chr2:20754600-20755400	Enhancers	Fetal Muscle Leg	muscle
16	chr2:20754800-20755400	Enhancers	K562	blood
17	chr2:20755000-20755600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr2:20755200-20755400	Enhancers	Spleen	Spleen
19	chr2:20755200-20755600	Enhancers	GM12878-XiMat	blood
20	chr2:20755200-20756000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:20755200-20756000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr2:20755200-20756800	Enhancers	HUVEC	blood vessel

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