Variant report

Variant	rs601018
Chromosome Location	chr1:193941569-193941570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12403843	0.85[ASN][1000 genomes]
rs12404680	0.95[ASN][1000 genomes]
rs12406963	0.95[ASN][1000 genomes]
rs16836059	0.80[ASN][1000 genomes]
rs16836073	0.86[ASN][1000 genomes]
rs34990096	0.91[ASN][1000 genomes]
rs35168515	0.91[ASN][1000 genomes]
rs588431	0.80[AFR][1000 genomes]
rs643764	0.80[AFR][1000 genomes]
rs6672292	0.98[ASN][1000 genomes]
rs72641801	1.00[ASN][1000 genomes]
rs72644103	0.85[ASN][1000 genomes]
rs72644113	0.86[ASN][1000 genomes]
rs72644116	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv947144	chr1:193921642-193969239	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv548664	chr1:193938944-194000953	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193938800-193941600	Enhancers	Hela-S3	cervix
2	chr1:193939800-193941600	Enhancers	NH-A	brain
3	chr1:193940600-193942200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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