Variant report

Variant	rs60109667
Chromosome Location	chr12:56062582-56062583
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs74093278	1.00[AMR][1000 genomes]
rs74093279	1.00[AMR][1000 genomes]
rs74093281	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948625	chr12:55838718-56118833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56060400-56064000	Weak transcription	Spleen	Spleen
2	chr12:56062000-56063600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr12:56062000-56063800	Weak transcription	Placenta	Placenta
4	chr12:56062000-56066600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr12:56062200-56064000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr12:56062200-56066800	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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