Variant report

Variant	rs60113577
Chromosome Location	chr7:78114014-78114015
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11979436	0.82[ASN][1000 genomes]
rs11980078	0.99[ASN][1000 genomes]
rs34037367	0.93[ASN][1000 genomes]
rs6466246	0.99[ASN][1000 genomes]
rs972545	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78103000-78117600	Weak transcription	Fetal Brain Female	brain
2	chr7:78103800-78115600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:78104400-78116800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:78106600-78117000	Weak transcription	Brain Germinal Matrix	brain
5	chr7:78108400-78116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:78108800-78117400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:78108800-78118800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:78109000-78118200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:78109200-78114400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:78109600-78117600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:78109600-78118600	Weak transcription	Fetal Heart	heart
12	chr7:78113600-78118600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:78113800-78114200	Weak transcription	Brain Substantia Nigra	brain
14	chr7:78113800-78114600	Enhancers	Brain Hippocampus Middle	brain
15	chr7:78113800-78114800	Enhancers	Brain Anterior Caudate	brain
16	chr7:78113800-78115800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:78114000-78114800	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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