Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10434745..10440361-chr2:10440769..10446494,13	MCF-7	breast:
2	chr2:10436642..10438745-chr2:10547775..10550649,2	K562	blood:

Variant related genes	Relation type
ENSG00000115756	Chromatin interaction

rSNPs within LD-proxies of this variant (count:4)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873639	chr2:10372061-10475308	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv19004	chr2:10433505-10439183	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10426200-10438000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:10426800-10437600	Weak transcription	Spleen	Spleen
3	chr2:10429600-10436800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:10434000-10437400	Weak transcription	HMEC	breast
5	chr2:10435200-10438200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:10435200-10438800	Enhancers	Placenta	Placenta
7	chr2:10435400-10438600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:10435600-10437800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:10435800-10437600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr2:10435800-10437800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:10435800-10441000	Weak transcription	Stomach Mucosa	stomach
12	chr2:10436000-10442000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr2:10436400-10437200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr2:10436600-10436800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr2:10436600-10437000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr2:10436600-10437200	Weak transcription	K562	blood
17	chr2:10436600-10437600	Weak transcription	NHEK	skin
18	chr2:10436600-10437800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr2:10436600-10438600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr2:10436600-10442200	Weak transcription	Placenta Amnion	Placenta Amnion

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