Variant report
| Variant | rs60131564 |
|---|---|
| Chromosome Location | chr12:42348190-42348191 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10459289 | 1.00[EUR][1000 genomes] |
| rs10880193 | 1.00[EUR][1000 genomes] |
| rs10880195 | 1.00[EUR][1000 genomes] |
| rs10880201 | 1.00[EUR][1000 genomes] |
| rs10880202 | 1.00[EUR][1000 genomes] |
| rs10880203 | 1.00[EUR][1000 genomes] |
| rs10880204 | 1.00[EUR][1000 genomes] |
| rs10880205 | 1.00[EUR][1000 genomes] |
| rs10880206 | 1.00[EUR][1000 genomes] |
| rs10880207 | 1.00[EUR][1000 genomes] |
| rs10880208 | 1.00[EUR][1000 genomes] |
| rs10880209 | 1.00[EUR][1000 genomes] |
| rs10880210 | 1.00[EUR][1000 genomes] |
| rs10880211 | 1.00[EUR][1000 genomes] |
| rs11181226 | 1.00[EUR][1000 genomes] |
| rs11181249 | 1.00[EUR][1000 genomes] |
| rs11181253 | 1.00[EUR][1000 genomes] |
| rs11181258 | 1.00[EUR][1000 genomes] |
| rs11181266 | 1.00[EUR][1000 genomes] |
| rs11181267 | 1.00[EUR][1000 genomes] |
| rs11181268 | 1.00[EUR][1000 genomes] |
| rs11181270 | 1.00[EUR][1000 genomes] |
| rs12228308 | 1.00[EUR][1000 genomes] |
| rs12301500 | 1.00[EUR][1000 genomes] |
| rs12306858 | 1.00[EUR][1000 genomes] |
| rs12313177 | 1.00[EUR][1000 genomes] |
| rs1541492 | 1.00[EUR][1000 genomes] |
| rs2191514 | 1.00[EUR][1000 genomes] |
| rs28540140 | 1.00[EUR][1000 genomes] |
| rs59711995 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430505 | chr12:42297931-42720773 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv832387 | chr12:42345541-42465505 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42346600-42350200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr12:42347000-42350000 | Weak transcription | Brain Cingulate Gyrus | brain |
