Variant report

Variant	rs60133756
Chromosome Location	chr12:122945258-122945259
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55742122	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56255783	1.00[AMR][1000 genomes]
rs56345648	0.85[AFR][1000 genomes]
rs56840285	0.83[AFR][1000 genomes]
rs56882949	0.95[AFR][1000 genomes]
rs56939641	1.00[AMR][1000 genomes]
rs58158680	0.88[AFR][1000 genomes]
rs58388699	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58470544	1.00[AMR][1000 genomes]
rs58862482	0.90[AFR][1000 genomes]
rs61183779	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7132364	0.95[AFR][1000 genomes]
rs7135827	0.84[AFR][1000 genomes]
rs7298781	0.91[AFR][1000 genomes]
rs7307858	0.84[AFR][1000 genomes]
rs7962592	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv973945	chr12:122923254-122958354	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122922800-122960400	Weak transcription	Right Atrium	heart
2	chr12:122938800-122957000	Weak transcription	Thymus	Thymus
3	chr12:122939000-122947400	Weak transcription	Placenta	Placenta
4	chr12:122939200-122948000	Weak transcription	Hela-S3	cervix
5	chr12:122939600-122955200	Weak transcription	Fetal Thymus	thymus
6	chr12:122941200-122947400	Weak transcription	Fetal Intestine Small	intestine
7	chr12:122941200-122957200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr12:122942200-122948000	Weak transcription	Fetal Intestine Large	intestine
9	chr12:122943200-122948400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:122943600-122951400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr12:122944200-122947400	Weak transcription	NHLF	lung
12	chr12:122944200-122948200	Weak transcription	A549	lung
13	chr12:122944200-122948400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr12:122944200-122948400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:122944400-122946800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr12:122944400-122948000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr12:122944400-122957000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr12:122944800-122945800	Enhancers	GM12878-XiMat	blood
19	chr12:122945000-122945400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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