Variant report

Variant	rs6013874
Chromosome Location	chr20:52633155-52633156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:52581180..52583865-chr20:52632082..52634620,2	MCF-7	breast:
2	chr17:58820431..58822124-chr20:52629626..52633490,4	MCF-7	breast:
3	chr20:52628442..52630921-chr20:52632411..52634269,2	K562	blood:
4	chr17:58820299..58823467-chr20:52630245..52633492,6	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16998844	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2214529	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6013875	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6013877	0.93[EUR][1000 genomes]
rs6013878	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6022920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6022922	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6022934	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34060	chr20:52251863-52702186	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	296 gene(s)	inside rSNPs	diseases
2	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52566400-52644800	Weak transcription	Gastric	stomach
2	chr20:52618800-52644400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr20:52624000-52633400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr20:52627600-52633200	Weak transcription	Brain Angular Gyrus	brain
5	chr20:52630800-52633200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr20:52631000-52633200	Weak transcription	Brain Substantia Nigra	brain
7	chr20:52631400-52634400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr20:52631400-52635800	Weak transcription	Stomach Mucosa	stomach
9	chr20:52631400-52637000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr20:52631400-52641400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr20:52631600-52633400	Weak transcription	Adipose Nuclei	Adipose
12	chr20:52631600-52634600	Weak transcription	Fetal Lung	lung
13	chr20:52631600-52636000	Weak transcription	NHDF-Ad	bronchial
14	chr20:52632000-52635000	Enhancers	Brain Hippocampus Middle	brain
15	chr20:52632200-52633200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr20:52632200-52633600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr20:52632800-52633400	Enhancers	GM12878-XiMat	blood
18	chr20:52633000-52633400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr20:52633000-52634000	Enhancers	Brain Anterior Caudate	brain
20	chr20:52633000-52635000	Enhancers	Primary B cells from cord blood	blood
21	chr20:52633000-52635400	Enhancers	Primary B cells from peripheral blood	blood
22	chr20:52633000-52636000	Enhancers	Primary monocytes fromperipheralblood	blood

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