Variant report

Variant	rs6013885
Chromosome Location	chr20:52697205-52697206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12625718	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16998896	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs368195	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs377887	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs383469	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs388759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs391906	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs392236	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6123357	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6127091	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6127092	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6127093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34060	chr20:52251863-52702186	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	296 gene(s)	inside rSNPs	diseases
2	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52693000-52701200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr20:52693400-52698600	Weak transcription	Stomach Mucosa	stomach
3	chr20:52693800-52697400	Enhancers	Primary hematopoietic stem cells	blood
4	chr20:52693800-52699200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr20:52694200-52697600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr20:52694400-52697400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr20:52695600-52700200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr20:52695800-52698800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr20:52696000-52698600	Weak transcription	A549	lung
10	chr20:52696600-52697600	Weak transcription	GM12878-XiMat	blood
11	chr20:52696600-52698600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr20:52697200-52697800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr20:52697200-52700600	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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