Variant report

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:52718236..52723040-chr20:52810797..52817780,169	MCF-7	breast:
2	chr17:56978457..56980198-chr20:52716373..52719120,2	MCF-7	breast:
3	chr17:56706304..56710637-chr20:52708902..52722942,22	MCF-7	breast:
4	chr20:52718652..52720166-chr3:12597603..12600058,2	MCF-7	breast:
5	chr20:52718018..52720477-chr8:101320363..101322308,2	MCF-7	breast:
6	chr20:46294406..46296720-chr20:52718393..52720596,2	MCF-7	breast:
7	chr17:57921397..57924347-chr20:52716590..52720160,4	MCF-7	breast:
8	chr20:52718651..52719318-chr20:52811679..52812494,3	MCF-7	breast:
9	chr20:46410730..46421216-chr20:52711028..52724253,28	MCF-7	breast:
10	chr20:52718541..52720185-chr20:52811223..52812435,5	MCF-7	breast:
11	chr20:52718490..52719463-chr20:52815969..52817223,5	MCF-7	breast:
12	chr17:57914067..57916662-chr20:52718746..52720834,2	MCF-7	breast:
13	chr20:52718555..52719158-chr20:52739812..52740855,3	MCF-7	breast:
14	chr20:52718473..52720185-chr20:52811223..52812490,9	MCF-7	breast:
15	chr20:52718746..52719361-chr20:52765699..52766209,2	MCF-7	breast:
16	chr17:57859882..57862542-chr20:52718438..52720258,2	MCF-7	breast:
17	chr20:52718858..52721683-chr20:52813902..52815240,37	MCF-7	breast:
18	chr20:52718501..52719345-chr20:52743465..52744028,2	MCF-7	breast:
19	chr17:56735120..56739266-chr20:52717504..52723217,7	MCF-7	breast:
20	chr17:57924197..57927092-chr20:52718696..52721514,3	MCF-7	breast:
21	chr17:56734263..56738304-chr20:52709856..52719047,15	MCF-7	breast:
22	chr17:56703018..56712407-chr20:52697460..52725685,93	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1477641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1841850	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6013892	0.89[CEU][hapmap]
rs6022964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6097766	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8123293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv586280	chr20:52718555-52758416	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52714000-52721200	Weak transcription	HMEC	breast
2	chr20:52714000-52721800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:52715800-52719800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr20:52717800-52719200	Enhancers	A549	lung
5	chr20:52718000-52720200	Enhancers	Placenta	Placenta
6	chr20:52718400-52719800	Enhancers	HepG2	liver
7	chr20:52718800-52721200	Weak transcription	NHEK	skin

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